IL_5WSG_004
3D structure
- PDB id
- 5WSG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCC*GA
- Length
- 5 nucleotides
- Bulged bases
- 5WSG|1|E|C|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WSG_004 not in the Motif Atlas
- Geometric match to IL_8F5G_002
- Geometric discrepancy: 0.3725
- The information below is about IL_8F5G_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 61
Unit IDs
5WSG|1|E|U|65
5WSG|1|E|C|66
5WSG|1|E|C|67
*
5WSG|1|E|G|81
5WSG|1|E|A|82
Current chains
- Chain E
- Saccharomyces cerevisiae S288c SNR6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- 5'-exon
- Chain N
- 5'-intron-lariat
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-processing protein 45
- Chain Q
- Pre-mRNA-splicing factor SLT11
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain c
- Pre-mRNA-splicing factor CEF1,Pre-mRNA-splicing factor CEF1,Cef1,Pre-mRNA-splicing factor CEF1
- Chain d
- Pre-mRNA-splicing factor CLF1,Pre-mRNA-splicing factor CLF1,Clf1
Coloring options: