IL_5WSG_006
3D structure
- PDB id
- 5WSG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GU*AAC
- Length
- 5 nucleotides
- Bulged bases
- 5WSG|1|M|A|501
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WSG_006 not in the Motif Atlas
- Geometric match to IL_5TBW_013
- Geometric discrepancy: 0.3929
- The information below is about IL_5TBW_013
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5WSG|1|L|G|34
5WSG|1|L|U|35
*
5WSG|1|M|A|500
5WSG|1|M|A|501
5WSG|1|M|C|502
Current chains
- Chain L
- RNA (91-MER)
- Chain M
- 3'-intron-lariat
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- U6 spliceosomal RNA; U6 snRNA
- Chain N
- 5'-intron-lariat
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