3D structure

PDB id
5X2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Campylobacter jejuni Cas9 in complex with sgRNA and target DNA (AGAAACC PAM)
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GAAAU*ATTTC
Length
10 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5X2G|1|B|G|2
5X2G|1|B|A|3
5X2G|1|B|A|4
5X2G|1|B|A|5
5X2G|1|B|U|6
*
5X2G|1|C|DA|15
5X2G|1|C|DT|16
5X2G|1|C|DT|17
5X2G|1|C|DT|18
5X2G|1|C|DC|19

Current chains

Chain B
sgRNA
Chain C
Target DNA strand

Nearby chains

Chain A
CRISPR-associated endonuclease Cas9

Coloring options:

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