IL_5XI1_005

3D structure

PDB id

5XI1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Insight of Flavonoids binding to CAG repeat RNA that causes Huntington's Disease (HD) and Spinocerebellar Ataxia (SCAs)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAG*CAG

Length

6 nucleotides

Bulged bases

5XI1|5|S|A|5

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XI1_005 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2868

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

5XI1|5|A|C|4
5XI1|5|A|A|5
5XI1|5|A|G|6
*
5XI1|5|S|C|4
5XI1|5|S|A|5
5XI1|5|S|G|6

Current chains

Chain A

RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')

Chain S

RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')

Nearby chains