IL_5XJC_005

3D structure

PDB id

5XJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCG*CA

Length

5 nucleotides

Bulged bases

5XJC|1|F|C|6

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XJC_005 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.3331

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

5XJC|1|F|U|5
5XJC|1|F|C|6
5XJC|1|F|G|7
*
5XJC|1|F|C|14
5XJC|1|F|A|15

Current chains

Chain F

U6 snRNA

Nearby chains

Chain W

Pre-mRNA-processing factor 17