IL_5XJC_011
3D structure
- PDB id
- 5XJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUAUCC*GUGUA
- Length
- 11 nucleotides
- Bulged bases
- 5XJC|1|G|A|144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5XJC|1|G|U|142
5XJC|1|G|U|143
5XJC|1|G|A|144
5XJC|1|G|U|145
5XJC|1|G|C|146
5XJC|1|G|C|147
*
5XJC|1|H|G|31
5XJC|1|H|U|32
5XJC|1|H|G|33
5XJC|1|H|U|34
5XJC|1|H|A|35
Current chains
- Chain G
- pre-mRNA
- Chain H
- Homo sapiens small nuclear RNA (U2) gene
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain F
- U6 spliceosomal RNA; U6 snRNA
- Chain W
- Pre-mRNA-processing factor 17
- Chain X
- PRKR-interacting protein 1
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