IL_5XJC_013

3D structure

PDB id

5XJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAG*CCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XJC|1|H|G|112
5XJC|1|H|G|113
5XJC|1|H|A|114
5XJC|1|H|G|115
*
5XJC|1|H|C|141
5XJC|1|H|C|142
5XJC|1|H|A|143
5XJC|1|H|C|144

Current chains

Chain H

Homo sapiens small nuclear RNA (U2) gene

Nearby chains