IL_5XJC_015
3D structure
- PDB id
- 5XJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UA*UAAG
- Length
- 6 nucleotides
- Bulged bases
- 5XJC|1|H|A|23, 5XJC|1|H|A|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XJC_015 not in the Motif Atlas
- Geometric match to IL_1KXK_003
- Geometric discrepancy: 0.3696
- The information below is about IL_1KXK_003
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
5XJC|1|F|U|52
5XJC|1|F|A|53
*
5XJC|1|H|U|22
5XJC|1|H|A|23
5XJC|1|H|A|24
5XJC|1|H|G|25
Current chains
- Chain F
- U6 snRNA
- Chain H
- Homo sapiens small nuclear RNA (U2) gene
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain L
- Cell division cycle 5-like protein
- Chain R
- SNW domain-containing protein 1
Coloring options: