IL_5XJC_016
3D structure
- PDB id
- 5XJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUG*CUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XJC_016 not in the Motif Atlas
- Geometric match to IL_4V88_385
- Geometric discrepancy: 0.127
- The information below is about IL_4V88_385
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5XJC|1|F|G|88
5XJC|1|F|U|89
5XJC|1|F|G|90
*
5XJC|1|H|C|8
5XJC|1|H|U|9
5XJC|1|H|C|10
Current chains
- Chain F
- U6 snRNA
- Chain H
- Homo sapiens small nuclear RNA (U2) gene
Nearby chains
- Chain L
- Cell division cycle 5-like protein
- Chain M
- Pre-mRNA-splicing factor SYF2
Coloring options: