IL_5XYM_004
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GGGAG*CGUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 5XYM|1|A|U|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYM_004 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.2167
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
5XYM|1|A|G|81
5XYM|1|A|G|82
5XYM|1|A|G|83
5XYM|1|A|A|84
5XYM|1|A|G|85
*
5XYM|1|A|C|98
5XYM|1|A|G|99
5XYM|1|A|U|100
5XYM|1|A|U|101
5XYM|1|A|G|102
5XYM|1|A|A|103
5XYM|1|A|U|104
5XYM|1|A|C|105
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain U
- 50S ribosomal protein L24
- Chain Y
- 50S ribosomal protein L29
Coloring options: