IL_5XYM_006

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_006 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1134

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5XYM|1|A|U|242
5XYM|1|A|G|243
5XYM|1|A|A|244
5XYM|1|A|G|245
5XYM|1|A|U|246
5XYM|1|A|A|247
5XYM|1|A|G|248
*
5XYM|1|A|C|256
5XYM|1|A|G|257
5XYM|1|A|A|258
5XYM|1|A|A|259
5XYM|1|A|A|260
5XYM|1|A|G|261

Current chains

Chain A

23S RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15