IL_5XYM_015

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

5XYM|1|A|A|882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_015 not in the Motif Atlas

Homologous match to IL_5J7L_261

Geometric discrepancy: 0.1152

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5XYM|1|A|C|815
5XYM|1|A|C|816
*
5XYM|1|A|G|881
5XYM|1|A|A|882
5XYM|1|A|G|883

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2