IL_5XYM_016

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

5XYM|1|A|G|847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_016 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.132

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

5XYM|1|A|G|820
5XYM|1|A|U|821
*
5XYM|1|A|G|846
5XYM|1|A|G|847
5XYM|1|A|C|848

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2