IL_5XYM_027

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

5XYM|1|A|G|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_027 not in the Motif Atlas

Geometric match to IL_4LVW_002

Geometric discrepancy: 0.3583

The information below is about IL_4LVW_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

5XYM|1|A|G|1069
5XYM|1|A|G|1070
*
5XYM|1|A|U|1087
5XYM|1|A|G|1088
5XYM|1|A|C|1089

Current chains

Chain A

23S RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Z

50S ribosomal protein L30

Chain a

Uncharacterized protein bL37