IL_5XYM_030

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CCCCUAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_030 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.1142

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5XYM|1|A|C|1125
5XYM|1|A|C|1126
5XYM|1|A|C|1127
5XYM|1|A|C|1128
5XYM|1|A|U|1129
5XYM|1|A|A|1130
5XYM|1|A|A|1131
5XYM|1|A|G|1132
*
5XYM|1|A|C|1272
5XYM|1|A|G|1273

Current chains

Chain A

23S RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20