IL_5XYM_032
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CUAAGUG*CUCAAG
- Length
- 13 nucleotides
- Bulged bases
- 5XYM|1|A|C|1263, 5XYM|1|A|A|1265
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYM_032 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.1483
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
5XYM|1|A|C|1139
5XYM|1|A|U|1140
5XYM|1|A|A|1141
5XYM|1|A|A|1142
5XYM|1|A|G|1143
5XYM|1|A|U|1144
5XYM|1|A|G|1145
*
5XYM|1|A|C|1261
5XYM|1|A|U|1262
5XYM|1|A|C|1263
5XYM|1|A|A|1264
5XYM|1|A|A|1265
5XYM|1|A|G|1266
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L13
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