IL_5XYM_035

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

5XYM|1|A|G|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_035 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.0967

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5XYM|1|A|C|1314
5XYM|1|A|G|1315
5XYM|1|A|U|1316
*
5XYM|1|A|A|1365
5XYM|1|A|G|1366
5XYM|1|A|U|1367
5XYM|1|A|G|1368

Current chains

Chain A

23S RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20