IL_5XYM_042

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_042 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1024

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5XYM|1|A|C|1475
5XYM|1|A|G|1476
5XYM|1|A|A|1477
5XYM|1|A|G|1478
5XYM|1|A|G|1479
*
5XYM|1|A|C|1488
5XYM|1|A|G|1489
5XYM|1|A|U|1490
5XYM|1|A|A|1491
5XYM|1|A|G|1492

Current chains

Chain A

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2