IL_5XYM_047

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_047 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.3825

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tWH-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

5XYM|1|A|C|1697
5XYM|1|A|U|1698
5XYM|1|A|G|1699
5XYM|1|A|U|1700
5XYM|1|A|A|1701
5XYM|1|A|G|1702
*
5XYM|1|A|U|1738
5XYM|1|A|G|1739
5XYM|1|A|A|1740
5XYM|1|A|G|1741
5XYM|1|A|A|1742
5XYM|1|A|G|1743

Current chains

Chain A

23S RNA

Nearby chains