IL_5XYM_055

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5XYM|1|A|G|1920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_055 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0839

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5XYM|1|A|C|1907
5XYM|1|A|G|1908
5XYM|1|A|U|1909
5XYM|1|A|A|1910
5XYM|1|A|A|1911
5XYM|1|A|C|1912
*
5XYM|1|A|G|1917
5XYM|1|A|G|1918
5XYM|1|A|A|1919
5XYM|1|A|G|1920
5XYM|1|A|A|1921
5XYM|1|A|A|1922
5XYM|1|A|G|1923

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2