IL_5XYM_058

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

5XYM|1|A|G|2021, 5XYM|1|A|U|2036, 5XYM|1|A|U|2040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_058 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0924

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5XYM|1|A|U|2018
5XYM|1|A|G|2019
5XYM|1|A|C|2020
5XYM|1|A|G|2021
5XYM|1|A|A|2022
5XYM|1|A|A|2023
5XYM|1|A|G|2024
*
5XYM|1|A|C|2033
5XYM|1|A|G|2034
5XYM|1|A|A|2035
5XYM|1|A|U|2036
5XYM|1|A|G|2037
5XYM|1|A|U|2038
5XYM|1|A|A|2039
5XYM|1|A|U|2040
5XYM|1|A|A|2041

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2