IL_5XYM_065
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5XYM|1|A|A|2165, 5XYM|1|A|U|2171, 5XYM|1|A|U|2190
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYM_065 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1447
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5XYM|1|A|C|2161
5XYM|1|A|G|2162
5XYM|1|A|A|2163
5XYM|1|A|A|2164
5XYM|1|A|A|2165
5XYM|1|A|U|2166
5XYM|1|A|U|2167
5XYM|1|A|C|2168
5XYM|1|A|C|2169
5XYM|1|A|U|2170
5XYM|1|A|U|2171
5XYM|1|A|G|2172
*
5XYM|1|A|C|2188
5XYM|1|A|C|2189
5XYM|1|A|U|2190
5XYM|1|A|G|2191
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: