IL_5XYM_080

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_080 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1238

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5XYM|1|A|C|2693
5XYM|1|A|C|2694
5XYM|1|A|A|2695
5XYM|1|A|A|2696
5XYM|1|A|G|2697
*
5XYM|1|A|C|2707
5XYM|1|A|G|2708
5XYM|1|A|A|2709
5XYM|1|A|C|2710
5XYM|1|A|G|2711

Current chains

Chain A

23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain M

50S ribosomal protein L16