IL_5XYM_083

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5XYM|1|A|A|2799, 5XYM|1|A|C|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_083 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.0934

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5XYM|1|A|C|2739
5XYM|1|A|G|2740
*
5XYM|1|A|C|2798
5XYM|1|A|A|2799
5XYM|1|A|C|2800
5XYM|1|A|G|2801

Current chains

Chain A

23S RNA

Nearby chains

Chain D

50S ribosomal protein L3