IL_5XYM_101

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGUUUC*GUCCAAGAG

Length

15 nucleotides

Bulged bases

5XYM|1|A|C|1049, 5XYM|1|A|G|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|U|962
5XYM|1|A|G|963
5XYM|1|A|U|964
5XYM|1|A|U|965
5XYM|1|A|U|966
5XYM|1|A|C|967
*
5XYM|1|A|G|1046
5XYM|1|A|U|1047
5XYM|1|A|C|1048
5XYM|1|A|C|1049
5XYM|1|A|A|1050
5XYM|1|A|A|1051
5XYM|1|A|G|1052
5XYM|1|A|A|1053
5XYM|1|A|G|1054

Current chains

Chain A

23S RNA

Nearby chains

Chain Z

50S ribosomal protein L30