IL_5XYM_104

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_104 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.3052

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5XYM|1|A|U|2071
5XYM|1|A|U|2072
5XYM|1|A|A|2073
5XYM|1|A|A|2074
5XYM|1|A|G|2075
*
5XYM|1|A|U|2114
5XYM|1|A|U|2115
5XYM|1|A|A|2116
5XYM|1|A|A|2117
5XYM|1|A|G|2118

Current chains

Chain A

23S RNA

Nearby chains