IL_5XYU_016

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

5XYU|1|A|U|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_016 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1827

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5XYU|1|A|G|409
5XYU|1|A|G|410
5XYU|1|A|A|411
5XYU|1|A|U|412
5XYU|1|A|G|413
5XYU|1|A|A|414
5XYU|1|A|C|415
5XYU|1|A|G|416
*
5XYU|1|A|U|427
5XYU|1|A|G|428
5XYU|1|A|U|429
5XYU|1|A|A|430
5XYU|1|A|A|431
5XYU|1|A|A|432
5XYU|1|A|C|433

Current chains

Chain A

16S RNA

Nearby chains

Chain D

30S ribosomal protein S4