IL_5XYU_020

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

AGUGCCAG*CGGUAAUACGU

Length

19 nucleotides

Bulged bases

5XYU|1|A|A|512, 5XYU|1|A|U|514

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYU|1|A|A|493
5XYU|1|A|G|495
5XYU|1|A|U|496
5XYU|1|A|G|497
5XYU|1|A|C|498
5XYU|1|A|C|499
5XYU|1|A|A|500
5XYU|1|A|G|501
*
5XYU|1|A|C|508
5XYU|1|A|G|509
5XYU|1|A|G|510
5XYU|1|A|U|511
5XYU|1|A|A|512
5XYU|1|A|A|513
5XYU|1|A|U|514
5XYU|1|A|A|515
5XYU|1|A|C|516
5XYU|1|A|G|517
5XYU|1|A|U|518

Current chains

Chain A

16S RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain L

30S ribosomal protein S12