IL_5XYU_023

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_023 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2116

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

5XYU|1|A|U|570
5XYU|1|A|U|571
5XYU|1|A|G|572
*
5XYU|1|A|C|627
5XYU|1|A|G|629

Current chains

Chain A

16S RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17