IL_5XYU_028

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GUAC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_028 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3705

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5XYU|1|A|G|636
5XYU|1|A|U|637
5XYU|1|A|A|638
5XYU|1|A|C|639
*
5XYU|1|A|G|726
5XYU|1|A|U|727
5XYU|1|A|A|728
5XYU|1|A|A|729
5XYU|1|A|C|730

Current chains

Chain A

16S RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15