IL_5XYU_035

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

5XYU|1|A|A|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_035 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3039

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5XYU|1|A|G|904
5XYU|1|A|A|905
5XYU|1|A|C|906
*
5XYU|1|A|G|1375
5XYU|1|A|U|1376
5XYU|1|A|A|1377
5XYU|1|A|C|1378

Current chains

Chain A

16S RNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain U

Conserved domain protein