IL_5XYU_044

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UGU*AGACUGCCCUCGGAGGAAGGUG

Length

25 nucleotides

Bulged bases

5XYU|1|A|U|1164

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYU|1|A|U|1096
5XYU|1|A|G|1097
5XYU|1|A|U|1098
*
5XYU|1|A|A|1136
5XYU|1|A|G|1137
5XYU|1|A|A|1138
5XYU|1|A|C|1139
5XYU|1|A|U|1140
5XYU|1|A|G|1141
5XYU|1|A|C|1142
5XYU|1|A|C|1143
5XYU|1|A|C|1152
5XYU|1|A|U|1153
5XYU|1|A|C|1154
5XYU|1|A|G|1155
5XYU|1|A|G|1156
5XYU|1|A|A|1157
5XYU|1|A|G|1158
5XYU|1|A|G|1159
5XYU|1|A|A|1160
5XYU|1|A|A|1161
5XYU|1|A|G|1162
5XYU|1|A|G|1163
5XYU|1|A|U|1164
5XYU|1|A|G|1165

Current chains

Chain A

16S RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z