IL_5XYU_059
3D structure
- PDB id
- 5XYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of Mycobacterium smegmatis ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- CUGCCC*GGAUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYU_059 not in the Motif Atlas
- Geometric match to IL_8CRE_399
- Geometric discrepancy: 0.3919
- The information below is about IL_8CRE_399
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5XYU|1|A|C|129
5XYU|1|A|U|130
5XYU|1|A|G|131
5XYU|1|A|C|132
5XYU|1|A|C|133
5XYU|1|A|C|134
*
5XYU|1|A|G|226
5XYU|1|A|G|227
5XYU|1|A|A|228
5XYU|1|A|U|229
5XYU|1|A|G|230
Current chains
- Chain A
- 16S RNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain Q
- 30S ribosomal protein S17
- Chain T
- 30S ribosomal protein S20
Coloring options: