IL_5XYU_071

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UGAAAAC*GCGUG

Length

12 nucleotides

Bulged bases

5XYU|1|A|U|612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYU|1|A|U|585
5XYU|1|A|G|586
5XYU|1|A|A|587
5XYU|1|A|A|588
5XYU|1|A|A|589
5XYU|1|A|A|590
5XYU|1|A|C|591
*
5XYU|1|A|G|609
5XYU|1|A|C|610
5XYU|1|A|G|611
5XYU|1|A|U|612
5XYU|1|A|G|613

Current chains

Chain A

16S RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain H

30S ribosomal protein S8

Chain P

30S ribosomal protein S16