3D structure

PDB id
5Y7M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUAA*UGAAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5Y7M_002 not in the Motif Atlas
Geometric match to IL_5Y7M_006
Geometric discrepancy: 0.1127
The information below is about IL_5Y7M_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47108.1
Basepair signature
cWW-L-R-L-tHH-L-cWW
Number of instances in this motif group
1

Unit IDs

5Y7M|1|B|U|8
5Y7M|1|B|U|9
5Y7M|1|B|A|10
5Y7M|1|B|A|11
*
5Y7M|1|B|U|39
5Y7M|1|B|G|40
5Y7M|1|B|A|41
5Y7M|1|B|A|42
5Y7M|1|B|A|43
5Y7M|1|B|G|44

Current chains

Chain B
RNA (52-MER)

Nearby chains

Chain C
50S ribosomal protein L7Ae

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3365 s