IL_5Y7M_004

3D structure

PDB id

5Y7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGACGAUC*GGGAU

Length

13 nucleotides

Bulged bases

5Y7M|1|B|C|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Y7M_004 not in the Motif Atlas

Geometric match to IL_5Y7M_008

Geometric discrepancy: 0.054

The information below is about IL_5Y7M_008

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5Y7M|1|B|A|17
5Y7M|1|B|G|18
5Y7M|1|B|A|19
5Y7M|1|B|C|20
5Y7M|1|B|G|21
5Y7M|1|B|A|22
5Y7M|1|B|U|23
5Y7M|1|B|C|24
*
5Y7M|1|B|G|29
5Y7M|1|B|G|30
5Y7M|1|B|G|31
5Y7M|1|B|A|32
5Y7M|1|B|U|33

Current chains

Chain B

RNA (52-MER)

Nearby chains

Chain A

50S ribosomal protein L7Ae