IL_5Y88_004
3D structure
- PDB id
- 5Y88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UCC*GA
- Length
- 5 nucleotides
- Bulged bases
- 5Y88|1|D|C|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Y88_004 not in the Motif Atlas
- Geometric match to IL_7KGA_004
- Geometric discrepancy: 0.391
- The information below is about IL_7KGA_004
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
5Y88|1|D|U|65
5Y88|1|D|C|66
5Y88|1|D|C|67
*
5Y88|1|D|G|81
5Y88|1|D|A|82
Current chains
- Chain D
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- Intron lariat
- Chain I
- Pre-mRNA-splicing factor CLF1
- Chain J
- Pre-mRNA-splicing factor CEF1
- Chain M
- Pre-mRNA-splicing factor SLT11
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-splicing factor CWC15
- Chain Q
- Pre-mRNA-processing protein 45
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