IL_5YLZ_007

3D structure

PDB id

5YLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

5YLZ|1|E|A|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5YLZ_007 not in the Motif Atlas

Geometric match to IL_5TBW_123

Geometric discrepancy: 0.3857

The information below is about IL_5TBW_123

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5YLZ|1|E|A|300
5YLZ|1|E|A|301
5YLZ|1|E|C|302
*
5YLZ|1|F|G|34
5YLZ|1|F|U|35

Current chains

Chain E

mRNA/intron lariat

Chain F

U2 snRNA

Nearby chains

Chain A

Pre-mRNA-splicing factor 8

Chain D

U6 spliceosomal RNA; U6 snRNA