IL_5YZG_006
3D structure
- PDB id
- 5YZG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GGAACG*CUCG*C
- Length
- 11 nucleotides
- Bulged bases
- 5YZG|1|F|C|37, 5YZG|1|G|G|12
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5YZG|1|F|G|33
5YZG|1|F|G|34
5YZG|1|F|A|35
5YZG|1|F|A|36
5YZG|1|F|C|37
5YZG|1|F|G|38
*
5YZG|1|G|C|9
5YZG|1|G|U|10
5YZG|1|G|C|13
5YZG|1|G|G|12
*
5YZG|1|G|C|13
Current chains
- Chain F
- U6 snRNA
- Chain G
- Pre-mRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain L
- Cell division cycle 5-like protein
- Chain O
- Pre-mRNA-splicing factor RBM22
- Chain y
- Pre-mRNA-splicing factor ISY1 homolog
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