IL_5YZG_010
3D structure
- PDB id
- 5YZG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AUG*UCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5YZG_010 not in the Motif Atlas
- Geometric match to IL_3SZX_003
- Geometric discrepancy: 0.1067
- The information below is about IL_3SZX_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
5YZG|1|G|A|130
5YZG|1|G|U|131
5YZG|1|G|G|132
*
5YZG|1|H|U|44
5YZG|1|H|C|45
5YZG|1|H|U|46
Current chains
- Chain G
- Pre-mRNA
- Chain H
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain Y
- Coiled-coil domain-containing protein 94
- Chain h
- Small nuclear ribonucleoprotein Sm D3
- Chain i
- Small nuclear ribonucleoprotein-associated proteins B and B'
- Chain y
- Pre-mRNA-splicing factor ISY1 homolog
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