IL_5Z57_002

3D structure

PDB id

5Z57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AGAUCG*CGU

Length

9 nucleotides

Bulged bases

5Z57|1|B|A|21, 5Z57|1|B|U|22

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5Z57|1|B|A|19
5Z57|1|B|G|20
5Z57|1|B|A|21
5Z57|1|B|U|22
5Z57|1|B|C|23
5Z57|1|B|G|24
*
5Z57|1|B|C|56
5Z57|1|B|G|57
5Z57|1|B|U|58

Current chains

Chain B

U5 snRNA

Nearby chains

Chain A

Pre-mRNA-processing-splicing factor 8

Chain C

116 kDa U5 small nuclear ribonucleoprotein component

Chain P

Spliceosome-associated protein CWC15 homolog