IL_5Z58_010
3D structure
- PDB id
- 5Z58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 5Z58|1|F|A|73, 5Z58|1|F|U|74
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z58_010 not in the Motif Atlas
- Geometric match to IL_5J7L_341
- Geometric discrepancy: 0.174
- The information below is about IL_5J7L_341
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
5Z58|1|F|C|61
5Z58|1|F|C|62
*
5Z58|1|F|G|72
5Z58|1|F|A|73
5Z58|1|F|U|74
5Z58|1|F|G|75
Current chains
- Chain F
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain G
- pre-mRNA
- Chain H
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain J
- Crooked neck-like protein 1
- Chain R
- Skip
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