IL_5ZEB_012

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAG*UGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_012 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.2113

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

5ZEB|1|A|U|374
5ZEB|1|A|A|375
5ZEB|1|A|G|376
*
5ZEB|1|A|U|425
5ZEB|1|A|G|426
5ZEB|1|A|A|427
5ZEB|1|A|A|428
5ZEB|1|A|A|429

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L24