IL_5ZEB_014

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

5ZEB|1|A|G|591, 5ZEB|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_014 not in the Motif Atlas

Geometric match to IL_5TBW_014

Geometric discrepancy: 0.16

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

5ZEB|1|A|G|569
5ZEB|1|A|U|570
5ZEB|1|A|A|571
5ZEB|1|A|C|572
*
5ZEB|1|A|G|583
5ZEB|1|A|A|584
5ZEB|1|A|G|585
5ZEB|1|A|U|586
5ZEB|1|A|G|587
5ZEB|1|A|A|588
5ZEB|1|A|A|589
5ZEB|1|A|A|590
5ZEB|1|A|G|591
5ZEB|1|A|A|592
5ZEB|1|A|G|593
5ZEB|1|A|U|594
5ZEB|1|A|A|595
5ZEB|1|A|C|596

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24