IL_5ZEB_019

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_019 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.1394

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5ZEB|1|A|U|699
5ZEB|1|A|U|700
5ZEB|1|A|A|701
5ZEB|1|A|A|702
5ZEB|1|A|C|703
*
5ZEB|1|A|G|712
5ZEB|1|A|G|713
5ZEB|1|A|U|714
5ZEB|1|A|A|715
5ZEB|1|A|G|716

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15