IL_5ZEB_039

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCCUAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_039 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.1008

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5ZEB|1|A|C|1122
5ZEB|1|A|C|1123
5ZEB|1|A|C|1124
5ZEB|1|A|C|1125
5ZEB|1|A|U|1126
5ZEB|1|A|A|1127
5ZEB|1|A|A|1128
5ZEB|1|A|G|1129
*
5ZEB|1|A|C|1269
5ZEB|1|A|G|1270

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

Uncharacterized protein bL37

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20