IL_5ZEB_041

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

5ZEB|1|A|C|1260, 5ZEB|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_041 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.1197

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5ZEB|1|A|C|1136
5ZEB|1|A|U|1137
5ZEB|1|A|A|1138
5ZEB|1|A|A|1139
5ZEB|1|A|G|1140
5ZEB|1|A|U|1141
5ZEB|1|A|G|1142
*
5ZEB|1|A|C|1258
5ZEB|1|A|U|1259
5ZEB|1|A|C|1260
5ZEB|1|A|A|1261
5ZEB|1|A|A|1262
5ZEB|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13