IL_5ZEB_052

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_052 not in the Motif Atlas

Homologous match to IL_7A0S_046

Geometric discrepancy: 0.125

The information below is about IL_7A0S_046

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

5ZEB|1|A|G|1425
5ZEB|1|A|G|1426
5ZEB|1|A|U|1427
5ZEB|1|A|U|1428
*
5ZEB|1|A|A|1821
5ZEB|1|A|C|1822

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain U

50S ribosomal protein L23