IL_5ZEB_064

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_064 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3666

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5ZEB|1|A|C|1694
5ZEB|1|A|U|1695
5ZEB|1|A|G|1696
5ZEB|1|A|U|1697
5ZEB|1|A|A|1698
5ZEB|1|A|G|1699
*
5ZEB|1|A|U|1735
5ZEB|1|A|G|1736
5ZEB|1|A|A|1737
5ZEB|1|A|G|1738
5ZEB|1|A|A|1739
5ZEB|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains