IL_5ZEB_074

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAAG*CCCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_074 not in the Motif Atlas

Geometric match to IL_1LNT_002

Geometric discrepancy: 0.3412

The information below is about IL_1LNT_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

5ZEB|1|A|U|1937
5ZEB|1|A|G|1938
5ZEB|1|A|U|1939
5ZEB|1|A|A|1940
5ZEB|1|A|A|1941
5ZEB|1|A|G|1942
*
5ZEB|1|A|C|1952
5ZEB|1|A|C|1953
5ZEB|1|A|C|1954
5ZEB|1|A|A|1955
5ZEB|1|A|A|1956
5ZEB|1|A|G|1957

Current chains

Chain A

23S rRNA

Nearby chains